Transcript: lnc-SYNDIG1-1:1

Basic information

LNCipedia transcript ID: lnc-SYNDIG1-1:1 
LNCipedia gene ID: lnc-SYNDIG1-1
Ensembl Gene ID: ENSG00000231015
Ensembl Transcript ID: ENST00000432834
Location (hg38): chr20:24679547-24680991
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 805 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027916; ENST00000432834; ENST00000432834.1; RP5-860P4.2-001; OTTHUMT00000078375.1; NONHSAT079114
Alternative gene names: XLOC_013498; linc-CST7-2; ENSG00000231015; RP5-860P4.2; ENSG00000231015.1; OTTHUMG00000032103.1; AL049594.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.2005 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNDIG1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYNDIG1-1:1
3.1 lnc-SYNDIG1-1:1
4.0 lnc-SYNDIG1-1:1
4.1 lnc-SYNDIG1-1:1
5.0 lnc-SYNDIG1-1:1
5.1 lnc-CST8-33:1
5.2 lnc-SYNDIG1-1:1