Transcript: lnc-SYNDIG1L-2:2

Basic information

LNCipedia transcript ID: lnc-SYNDIG1L-2:2 
LNCipedia gene ID: lnc-SYNDIG1L-2
Ensembl Gene ID: ENSG00000258559
Ensembl Transcript ID: ENST00000554532
Location (hg38): chr14:74289127-74294425
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1367 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT037782; ENST00000554532.2
Alternative gene names: ENSG00000258559.2; AC005519.4; AC005519.2; AC005519.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.1318 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNDIG1L-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYNDIG1L-1:5
4.0 lnc-SYNDIG1L-2:2
4.1 lnc-SYNDIG1L-2:2
5.0 lnc-SYNDIG1L-2:2
5.1 lnc-SYNDIG1L-2:2
5.2 lnc-SYNDIG1L-2:2