Transcript: lnc-SYNE1-1:1

Basic information

LNCipedia transcript ID: lnc-SYNE1-1:1 
LNCipedia gene ID: lnc-SYNE1-1
Ensembl Gene ID: ENSG00000233823
Ensembl Transcript ID: ENST00000451697
Location (hg38): chr6:151813276-151814179
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 258 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451697.1; RP3-443C4.2-001; OTTHUMT00000043922.1; NONHSAT115578
Alternative gene names: ENSG00000233823.1; RP3-443C4.2; OTTHUMG00000016436.1; AL356311.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -564.3364 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNE1-1:1 no no no no

Available literature

  1. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYNE1-1:1
4.0 lnc-SYNE1-1:1
4.1 lnc-SYNE1-1:1
5.0 lnc-SYNE1-1:1
5.1 lnc-SYNE1-4:1
5.2 lnc-SYNE1-1:1