Transcript: lnc-SYNE2-3:5

Basic information

LNCipedia transcript ID: lnc-SYNE2-3:5 
LNCipedia gene ID: lnc-SYNE2-3
Location (hg38): chr14:63642061-63665857
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 23797 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000019247.1|ENCT00000126794.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.6214 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNE2-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SYNE2-3:5
5.0 lnc-SYNE2-3:5
5.1 lnc-ACTR10-73:7
5.2 lnc-SYNE2-3:5