Transcript: lnc-SYNE3-1:6

Basic information

LNCipedia transcript ID: lnc-SYNE3-1:6 
LNCipedia gene ID: lnc-SYNE3-1
Location (hg38): chr14:95407269-95410090
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2822 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000464767; ENST00000464767.1; LINC00341-001; OTTHUMT00000072103.2
Alternative gene names: ENSG00000229645; NCRNA00341; ENSG00000229645.4; LINC00341; OTTHUMG00000028884.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.9217 non-coding 
CPAT coding probability 70.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SYNE3-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf49-1:1
3.1 lnc-C14orf49-1:1
4.0 LINC00341:1
4.1 LINC00341:1
5.0 LINC00341:1
5.1 lnc-SYNE3-1:1
5.2 lnc-SYNE3-1:6