Transcript: lnc-SYNE3-1:8

Basic information

LNCipedia transcript ID: lnc-SYNE3-1:8 
LNCipedia gene ID: lnc-SYNE3-1
Location (hg38): chr14:95409070-95409639
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 570 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000541579; ENST00000541579.1; LINC00341-201; NONHSAT039446
Alternative gene names: ENSG00000229645; NCRNA00341; ENSG00000229645.4; LINC00341; OTTHUMG00000028884.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.7028 non-coding 
CPAT coding probability 75.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SYNE3-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf49-1:2
3.1 lnc-C14orf49-1:2
4.0 LINC00341:3
4.1 LINC00341:3
5.0 LINC00341:3
5.1 lnc-SYNE3-1:4
5.2 lnc-SYNE3-1:8