Transcript: lnc-SYNGR1-11:1

Basic information

LNCipedia transcript ID: lnc-SYNGR1-11:1 
LNCipedia gene ID: lnc-SYNGR1-11
Ensembl Gene ID: ENSG00000284633
Ensembl Transcript ID: ENST00000641859
Location (hg38): chr22:39242188-39279897
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2474 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641859.1
Alternative gene names: ENSG00000284633.1; AL031590.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 30.2891 non-coding 
CPAT coding probability 8.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNGR1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-APOBEC3H-11:1
5.1 lnc-APOBEC3H-11:1
5.2 lnc-SYNGR1-11:1