Transcript: lnc-SYT1-3:2

Basic information

LNCipedia transcript ID: lnc-SYT1-3:2 
LNCipedia gene ID: lnc-SYT1-3
Ensembl Gene ID: ENSG00000257474
Ensembl Transcript ID: ENST00000551032
Location (hg38): chr12:79542206-79550346
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551032.1; RP11-359M6.1-002; OTTHUMT00000407123.1; NONHSAT029649; ENST00000551032.5
Alternative gene names: ENSG00000257474.1; RP11-359M6.1; OTTHUMG00000170065.1; ENSG00000257474.5; AC027288.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.5272 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYT1-3:2
4.0 lnc-SYT1-3:2
4.1 lnc-SYT1-3:2
5.0 lnc-SYT1-3:2
5.1 lnc-SYT1-3:2
5.2 lnc-SYT1-3:2