Transcript: lnc-SYT13-2:1

Basic information

LNCipedia transcript ID: lnc-SYT13-2:1 
LNCipedia gene ID: lnc-SYT13-2
Location (hg38): chr11:45146643-45214738
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1866 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000499027; NONHSAT019007
Alternative gene names: ENSG00000246343; AC103681.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.9421 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT13-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYT13-1:1
3.1 lnc-SYT13-2:1
4.0 lnc-SYT13-2:1
4.1 lnc-SYT13-2:1
5.0 lnc-SYT13-2:1
5.1 lnc-RAG2-48:3
5.2 lnc-SYT13-2:1