Transcript: lnc-SYT13-2:3

Basic information

LNCipedia transcript ID: lnc-SYT13-2:3 
LNCipedia gene ID: lnc-SYT13-2
Ensembl Gene ID: ENSG00000254664
Ensembl Transcript ID: ENST00000527450
Location (hg38): chr11:45215815-45235292
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 567 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527450.1; CTD-2560E9.3-001; OTTHUMT00000390109.1; NONHSAT019010
Alternative gene names: ENSG00000254664.1; CTD-2560E9.3; OTTHUMG00000166503.1; AC103681.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.9997 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT13-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYT13-1:1
4.0 lnc-SYT13-2:3
4.1 lnc-SYT13-2:3
5.0 lnc-SYT13-2:3
5.1 lnc-RAG2-48:1
5.2 lnc-SYT13-2:3