Transcript: lnc-SYT13-3:1

Basic information

LNCipedia transcript ID: lnc-SYT13-3:1 
LNCipedia gene ID: lnc-SYT13-3
Ensembl Gene ID: ENSG00000255041
Ensembl Transcript ID: ENST00000528445
Location (hg38): chr11:45387215-45513802
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 606 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528445; ENST00000528445.1; RP11-430H10.4-001; OTTHUMT00000390119.1; NONHSAT019026
Alternative gene names: ENSG00000255041; RP11-430H10.4; ENSG00000255041.1; OTTHUMG00000166508.1; AC103855.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.8908 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT13-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYT13-2:1
3.1 lnc-SYT13-3:1
4.0 lnc-SYT13-3:1
4.1 lnc-SYT13-3:1
5.0 lnc-SYT13-3:1
5.1 lnc-RAG2-49:1
5.2 lnc-SYT13-3:1