Transcript: lnc-SYT16-67:16

Basic information

LNCipedia transcript ID: lnc-SYT16-67:16 
LNCipedia gene ID: lnc-SYT16-67
Location (hg38): chr14:62127244-62128537
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1184 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000555934; ENST00000555934.1; RP11-355I22.3-001; OTTHUMT00000411706.1
Alternative gene names: ENSG00000186369; RP11-355I22.3; ENSG00000186369.5; OTTHUMG00000171566.1; LINC00643; ENSG00000186369.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 330.5643 coding 
CPAT coding probability 8.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SYT16-67:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYT16-1:6
3.1 lnc-SYT16-2:6
4.0 LINC00643:10
4.1 LINC00643:10
5.0 LINC00643:10
5.1 lnc-ACTR10-67:16
5.2 lnc-SYT16-67:16