Transcript: lnc-SYT17-1:2

Basic information

LNCipedia transcript ID: lnc-SYT17-1:2 
LNCipedia gene ID: lnc-SYT17-1
Ensembl Gene ID: ENSG00000259871
Ensembl Transcript ID: ENST00000565085
Location (hg38): chr16:19315164-19316526
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1363 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565085.1; CTA-363E6.1-001; OTTHUMT00000435882.1; NONHSAT140879
Alternative gene names: ENSG00000259871.1; CTA-363E6.1; OTTHUMG00000177219.1; AC130456.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.8373 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT17-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYT17-2:1
4.0 lnc-SYT17-2:1
4.1 lnc-CLEC19A.1-1:8
5.0 lnc-CLEC19A.1-1:8
5.1 lnc-TMC5-10:8
5.2 lnc-SYT17-1:2