Transcript: lnc-SYTL3-3:1

Basic information

LNCipedia transcript ID: lnc-SYTL3-3:1 
LNCipedia gene ID: lnc-SYTL3-3
Ensembl Gene ID: ENSG00000285159
Ensembl Transcript ID: ENST00000642329
Location (hg38): chr6:158853588-158864502
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2687 bp
Exons: 4
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642329.1
Alternative gene names: ENSG00000285159.1; AL627422.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.1054 non-coding 
CPAT coding probability 25.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYTL3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SYTL3-3:1
5.1 lnc-SYTL3-3:1
5.2 lnc-SYTL3-3:1