Transcript: lnc-SYTL5-1:1

Basic information

LNCipedia transcript ID: lnc-SYTL5-1:1 
LNCipedia gene ID: lnc-SYTL5-1
Ensembl Gene ID: ENSG00000226679
Ensembl Transcript ID: ENST00000423919
Location (hg38): chrX:38221391-38223667
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 655 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016976; ENST00000423919.1; RP13-43E11.1-001; OTTHUMT00000056244.1; NONHSAT136640
Alternative gene names: XLOC_007953; linc-OTC; ENSG00000226679.1; RP13-43E11.1; OTTHUMG00000021363.1; AL606748.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.7127 non-coding 
CPAT coding probability 4.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYTL5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYTL5-1:1
3.1 lnc-SYTL5-1:1
4.0 lnc-SYTL5-1:1
4.1 lnc-SYTL5-1:1
5.0 lnc-SYTL5-1:1
5.1 lnc-GK-74:1
5.2 lnc-SYTL5-1:1