Transcript: lnc-SYVN1-3:1

Basic information

LNCipedia transcript ID: lnc-SYVN1-3:1 
LNCipedia gene ID: lnc-SYVN1-3
Ensembl Gene ID: ENSG00000254614
Ensembl Transcript ID: ENST00000526623
Location (hg38): chr11:65180021-65181834
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1662 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526623.2
Alternative gene names: ENSG00000254614.2; AP003068.23; AP003068.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.4402 non-coding 
CPAT coding probability 98.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SYVN1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AP003068.23.1-2:1
4.1 lnc-AP003068.23.1-2:1
5.0 lnc-AP003068.23.1-2:1
5.1 lnc-LTBP3-26:1
5.2 lnc-SYVN1-3:1