Transcript: lnc-TACC2-10:2

Basic information

LNCipedia transcript ID: lnc-TACC2-10:2 
LNCipedia gene ID: lnc-TACC2-10
Location (hg38): chr10:121929589-121952788
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1630 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT016713
Alternative gene names: ENST00000437593


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7617 non-coding 
CPAT coding probability 7.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TACC2-10:2 no no no no

Available literature

  1. Luo (2015), Epigenetic regulation of lncRNA connects ubiquitin-proteasome system with infection-inflammation in preterm births and preterm premature rupture of membranes., BMC Pregnancy Childbirth


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TACC2-1:4
4.0 ATE1-AS1:5
4.1 ATE1-AS1:5
5.0 ATE1-AS1:5
5.1 lnc-EDRF1-82:2
5.2 lnc-TACC2-10:2