Transcript: lnc-TACC2-8:1

Basic information

LNCipedia transcript ID: lnc-TACC2-8:1 
LNCipedia gene ID: lnc-TACC2-8
Ensembl Gene ID: ENSG00000276742
Ensembl Transcript ID: ENST00000618971
Location (hg38): chr10:121956782-121957098
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 317 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618971.1
Alternative gene names: ENSG00000276742.1; RP11-500G22.4; ENST00000437593; AL731566.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -261.289 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TACC2-8:1 no no no no

Available literature

  1. Luo (2015), Epigenetic regulation of lncRNA connects ubiquitin-proteasome system with infection-inflammation in preterm births and preterm premature rupture of membranes., BMC Pregnancy Childbirth


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TACC2-7:1
4.1 ATE1-AS1:13
5.0 ATE1-AS1:13
5.1 lnc-EDRF1-51:13
5.2 lnc-TACC2-8:1