Transcript: lnc-TAF13-2:1

Basic information

LNCipedia transcript ID: lnc-TAF13-2:1 
LNCipedia gene ID: lnc-TAF13-2
Ensembl Gene ID: ENSG00000273382
Ensembl Transcript ID: ENST00000608574
Location (hg38): chr1:109087971-109090858
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2888 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608574.1
Alternative gene names: ENSG00000273382.1; RP5-1065J22.8; AL356488.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2964 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF13-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF13-2:1
4.0 lnc-TAF13-2:1
4.1 lnc-TAF13-2:1
5.0 lnc-TAF13-2:1
5.1 lnc-LAMTOR5-27:3
5.2 lnc-TAF13-2:1