Transcript: lnc-TAF1C-1:2

Basic information

LNCipedia transcript ID: lnc-TAF1C-1:2 
LNCipedia gene ID: lnc-TAF1C-1
Ensembl Gene ID: ENSG00000250685
Ensembl Transcript ID: ENST00000565643
Location (hg38): chr16:84192558-84197053
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2551 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565643.1; RP11-486L19.2-001; OTTHUMT00000433394.1; NONHSAT144053; ENST00000565643.5
Alternative gene names: ENSG00000250685.3; RP11-486L19.2; OTTHUMG00000176733.1; ENSG00000250685.7; AC009123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 65.5366 coding 
CPAT coding probability 36.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TAF1C-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF1C-1:2
4.0 lnc-TAF1C-1:2
4.1 lnc-TAF1C-1:2
5.0 lnc-TAF1C-1:2
5.1 lnc-MTHFSD-44:2
5.2 lnc-TAF1C-1:2