Transcript: lnc-TAF3-1:10

Basic information

LNCipedia transcript ID: lnc-TAF3-1:10 
LNCipedia gene ID: lnc-TAF3-1
Ensembl Gene ID: ENSG00000232638
Ensembl Transcript ID: ENST00000418270
Location (hg38): chr10:8051541-8053084
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 402 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017782; ENST00000418270; ENST00000418270.1; RP11-379F12.4-001; OTTHUMT00000046724.1; NONHSAT011312
Alternative gene names: XLOC_008381; linc-GATA3-1; ENSG00000232638; RP11-379F12.4; ENSG00000232638.1; OTTHUMG00000017642.1; AL390294.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -319.3893 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF3-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-1:2
3.1 lnc-GATA3-1:2
4.0 lnc-GATA3-1:2
4.1 lnc-GATA3-1:2
5.0 lnc-GATA3-1:2
5.1 lnc-NPY4R2-429:5
5.2 lnc-TAF3-1:10