Transcript: lnc-TAF3-1:11

Basic information

LNCipedia transcript ID: lnc-TAF3-1:11 
LNCipedia gene ID: lnc-TAF3-1
Location (hg38): chr10:8052294-8053485
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 842 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018678; NONHSAT011315
Alternative gene names: XLOC_008381; linc-GATA3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -319.3893 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF3-1:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-1:3
3.1 lnc-GATA3-1:3
4.0 lnc-GATA3-1:3
4.1 lnc-GATA3-1:3
5.0 lnc-GATA3-1:3
5.1 lnc-NPY4R2-429:6
5.2 lnc-TAF3-1:11