Transcript: lnc-TAF3-1:7

Basic information

LNCipedia transcript ID: lnc-TAF3-1:7 
LNCipedia gene ID: lnc-TAF3-1
Location (hg38): chr10:8051164-8052763
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 785 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018677; NONHSAT011311
Alternative gene names: XLOC_008381; linc-GATA3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.2761 non-coding 
CPAT coding probability 27.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF3-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-1:1
3.1 lnc-GATA3-1:1
4.0 lnc-GATA3-1:1
4.1 lnc-GATA3-1:1
5.0 lnc-GATA3-1:1
5.1 lnc-NPY4R2-429:2
5.2 lnc-TAF3-1:7