Transcript: lnc-TARBP1-5:1

Basic information

LNCipedia transcript ID: lnc-TARBP1-5:1 
LNCipedia gene ID: lnc-TARBP1-5
Location (hg38): chr1:233950438-233951107
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 597 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000452766.1; RP11-488L4.1-001; OTTHUMT00000098991.1; NONHSAT010267
Alternative gene names: ENSG00000234453.1; RP11-488L4.1; OTTHUMG00000041309.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.2727 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TARBP1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TARBP1-5:1
4.0 lnc-TARBP1-5:1
4.1 lnc-TARBP1-5:1
5.0 lnc-TARBP1-5:1
5.1 lnc-SIPA1L2-21:1
5.2 lnc-TARBP1-5:1