Transcript: lnc-TARDBP-5:3

Basic information

LNCipedia transcript ID: lnc-TARDBP-5:3 
LNCipedia gene ID: lnc-TARDBP-5
Location (hg38): chr1:11060288-11065543
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5256 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000016561.1|ENCT00000001356.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.8562 non-coding 
CPAT coding probability 6.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TARDBP-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TARDBP-5:3
5.0 lnc-TARDBP-5:3
5.1 lnc-KIF1B-33:3
5.2 lnc-TARDBP-5:3