Transcript: lnc-TAS2R1-1:2

Basic information

LNCipedia transcript ID: lnc-TAS2R1-1:2 
LNCipedia gene ID: lnc-TAS2R1-1
Ensembl Gene ID: ENSG00000248525
Ensembl Transcript ID: ENST00000504182
Location (hg38): chr5:9621377-9658458
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 420 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504182.2
Alternative gene names: ENSG00000248525.2; CTD-2001E22.1; AC026787.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -307.1944 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAS2R1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAS2R1-1:2
4.0 lnc-TAS2R1-1:2
4.1 lnc-TAS2R1-1:2
5.0 lnc-TAS2R1-1:2
5.1 lnc-IRX2-118:1
5.2 lnc-TAS2R1-1:2