Transcript: lnc-TASP1-5:6

Basic information

LNCipedia transcript ID: lnc-TASP1-5:6 
LNCipedia gene ID: lnc-TASP1-5
RefSeq ID: NR_109872
Location (hg38): chr20:12934877-12936963
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 830 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109872.1
Alternative gene names: LOC102606466


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.2209 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TASP1-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-JAG1-5:15
5.1 lnc-JAG1-5:15
5.2 lnc-TASP1-5:6