Transcript: lnc-TBC1D22A-2:1

Basic information

LNCipedia transcript ID: lnc-TBC1D22A-2:1 
LNCipedia gene ID: lnc-TBC1D22A-2
Location (hg38): chr22:46603698-46607367
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3283 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000502868; NONHSAT087331
Alternative gene names: ENSG00000249879; AL021392.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.2414 non-coding 
CPAT coding probability 19.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D22A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D22A-2:1
3.1 lnc-TBC1D22A-2:1
4.0 lnc-TBC1D22A-2:1
4.1 lnc-TBC1D22A-2:1
5.0 lnc-TBC1D22A-2:1
5.1 lnc-TRMU-4:1
5.2 lnc-TBC1D22A-2:1