Transcript: lnc-TBC1D22A-4:3

Basic information

LNCipedia transcript ID: lnc-TBC1D22A-4:3 
LNCipedia gene ID: lnc-TBC1D22A-4
Ensembl Gene ID: ENSG00000224271
Ensembl Transcript ID: ENST00000438810
Location (hg38): chr22:47686241-47690847
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 585 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438810; ENST00000438810.1; RP11-191L9.4-003; OTTHUMT00000317558.1; NONHSAT087358
Alternative gene names: ENSG00000224271; RP11-191L9.4; ENSG00000224271.1; OTTHUMG00000150321.1; ENSG00000224271.5; AL117329.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.5298 non-coding 
CPAT coding probability 6.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D22A-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D22A-4:3
3.1 lnc-TBC1D22A-4:3
4.0 lnc-TBC1D22A-4:3
4.1 lnc-TBC1D22A-4:3
5.0 lnc-TBC1D22A-4:3
5.1 lnc-GRAMD4-8:17
5.2 lnc-TBC1D22A-4:3