Transcript: lnc-TBC1D3I-3:1

Basic information

LNCipedia transcript ID: lnc-TBC1D3I-3:1 
LNCipedia gene ID: lnc-TBC1D3I-3
Ensembl Gene ID: ENSG00000278097
Ensembl Transcript ID: ENST00000578447
Location (hg38): chr17:36225246-36226807
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 247 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053190; ENST00000590860.1; ENST00000578447.2
Alternative gene names: ENSG00000267330.1; AC131056.5; ENSG00000278097.1; AC243829.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.2594 non-coding 
CPAT coding probability 6.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TBC1D3I-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBC1D3C-3:1
4.0 lnc-TBC1D3C-3:1
4.1 lnc-TBC1D3C-3:1
5.0 lnc-TBC1D3C-3:1
5.1 lnc-SRCIN1-67:1
5.2 lnc-TBC1D3I-3:1