Transcript: lnc-TBC1D7-1:4

Basic information

LNCipedia transcript ID: lnc-TBC1D7-1:4 
LNCipedia gene ID: lnc-TBC1D7-1
Ensembl Gene ID: ENSG00000215022
Ensembl Transcript ID: ENST00000606150
Location (hg38): chr6:13279295-13295586
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2305 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606150.1; ENST00000606150.5
Alternative gene names: ENSG00000215022.3; RP1-257A7.4; ENSG00000215022.7; AL008729.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.1386 non-coding 
CPAT coding probability 38.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TBC1D7-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GFOD1-1:3
4.0 lnc-TBC1D7-1:4
4.1 lnc-TBC1D7-1:4
5.0 lnc-TBC1D7-1:4
5.1 lnc-ECI2-261:2
5.2 lnc-TBC1D7-1:4