Transcript: lnc-TBC1D8-2:3

Basic information

LNCipedia transcript ID: lnc-TBC1D8-2:3 
LNCipedia gene ID: lnc-TBC1D8-2
Ensembl Gene ID: ENSG00000230140
Ensembl Transcript ID: ENST00000439150
Location (hg38): chr2:100972648-100975700
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 493 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439150.1; AC016738.3-002; OTTHUMT00000329083.1; NONHSAT072799; ENST00000439150.5
Alternative gene names: ENSG00000230140.1; AC016738.3; OTTHUMG00000153028.1; ENSG00000230140.5; AC016738.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.1822 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D8-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBC1D8-2:3
4.0 lnc-TBC1D8-2:3
4.1 lnc-TBC1D8-2:3
5.0 lnc-TBC1D8-2:3
5.1 lnc-AFF3-20:4
5.2 lnc-TBC1D8-2:3