Transcript: lnc-TBC1D8-3:1

Basic information

LNCipedia transcript ID: lnc-TBC1D8-3:1 
LNCipedia gene ID: lnc-TBC1D8-3
Ensembl Gene ID: ENSG00000228488
Ensembl Transcript ID: ENST00000443030
Location (hg38): chr2:100722221-100722882
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 236 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003341; ENST00000443030; ENST00000443030.1; AC092168.4-001; OTTHUMT00000329808.1; NONHSAT072789
Alternative gene names: XLOC_002224; linc-CHST10-2; ENSG00000228488; AC092168.4; ENSG00000228488.1; OTTHUMG00000153159.1; AC092168.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D8-1:1
3.1 lnc-TBC1D8-3:1
4.0 lnc-TBC1D8-3:1
4.1 lnc-TBC1D8-3:1
5.0 lnc-TBC1D8-3:1
5.1 lnc-AFF3-14:1
5.2 lnc-TBC1D8-3:1