Transcript: lnc-TBCD-2:4

Basic information

LNCipedia transcript ID: lnc-TBCD-2:4 
LNCipedia gene ID: lnc-TBCD-2
Ensembl Gene ID: ENSG00000262339
Ensembl Transcript ID: ENST00000576197
Location (hg38): chr17:82981082-82981738
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576197.1; RP11-1197K16.2-002; OTTHUMT00000438958.1; NONHSAT056769
Alternative gene names: ENSG00000262339.1; RP11-1197K16.2; OTTHUMG00000177789.1; ENSG00000262339.5; AC130371.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6614 non-coding 
CPAT coding probability 9.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBCD-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBCD-2:4
4.0 lnc-TBCD-2:4
4.1 lnc-TBCD-2:4
5.0 lnc-TBCD-2:4
5.1 lnc-TSPAN10-89:4
5.2 lnc-TBCD-2:4