Transcript: lnc-TBP-1:2

Basic information

LNCipedia transcript ID: lnc-TBP-1:2 
LNCipedia gene ID: lnc-TBP-1
Location (hg38): chr6:170695314-170696947
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 802 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00011200
Alternative gene names: XLOC_005565;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.3128 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBP-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBP-1:2
3.1 lnc-TBP-1:2
4.0 lnc-TBP-1:2
4.1 lnc-TBP-1:2
5.0 lnc-TBP-1:2
5.1 lnc-SYTL3-143:2
5.2 lnc-TBP-1:2