Transcript: lnc-TBX15-1:2

Basic information

LNCipedia transcript ID: lnc-TBX15-1:2 
LNCipedia gene ID: lnc-TBX15-1
Ensembl Gene ID: ENSG00000226172
Ensembl Transcript ID: ENST00000439394
Location (hg38): chr1:119000344-119001392
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 653 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000618; ENST00000439394; ENST00000439394.1; RP4-712E4.1-001; OTTHUMT00000034368.1; NONHSAT005515
Alternative gene names: XLOC_000982; linc-TBX15; ENSG00000226172; RP4-712E4.1; ENSG00000226172.2; OTTHUMG00000012337.1; AL139420.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -293.3741 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBX15-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBX15-1:2
3.1 lnc-TBX15-1:2
4.0 lnc-TBX15-1:2
4.1 lnc-TBX15-1:2
5.0 lnc-TBX15-1:2
5.1 lnc-WARS2-1:6
5.2 lnc-TBX15-1:2