Transcript: lnc-TBX2-3:2

Basic information

LNCipedia transcript ID: lnc-TBX2-3:2 
LNCipedia gene ID: lnc-TBX2-3
Ensembl Gene ID: ENSG00000266934
Ensembl Transcript ID: ENST00000585495
Location (hg38): chr17:61383401-61384680
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 716 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT055120; ENST00000585495.1
Alternative gene names: ENSG00000266934.1; RP11-332H18.3; AC005746.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.0339 non-coding 
CPAT coding probability 5.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBX2-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBX2-3:2
4.0 lnc-TBX2-3:2
4.1 lnc-TBX2-3:2
5.0 lnc-TBX2-3:2
5.1 lnc-VMP1-29:2
5.2 lnc-TBX2-3:2