Transcript: lnc-TBX3-6:1

Basic information

LNCipedia transcript ID: lnc-TBX3-6:1 
LNCipedia gene ID: lnc-TBX3-6
Ensembl Gene ID: ENSG00000271579
Ensembl Transcript ID: ENST00000603439
Location (hg38): chr12:115299588-115300708
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1121 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT030907; ENST00000603439.1
Alternative gene names: ENSG00000271579.1; RP11-116D17.3; AC078880.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5166 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBX3-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBX3-6:1
4.0 lnc-TBX3-6:1
4.1 lnc-TBX3-6:1
5.0 lnc-TBX3-6:1
5.1 lnc-TBX3-6:1
5.2 lnc-TBX3-6:1