Transcript: lnc-TC2N-1:1

Basic information

LNCipedia transcript ID: lnc-TC2N-1:1 
LNCipedia gene ID: lnc-TC2N-1
Location (hg38): chr14:91756759-91759798
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3040 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565058.1; RP11-747H7.3-001; OTTHUMT00000421598.1; NONHSAT039286
Alternative gene names: ENSG00000260711.1; RP11-747H7.3; OTTHUMG00000172989.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3682 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TC2N-1:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TC2N-1:1
4.0 lnc-TC2N-1:1
4.1 lnc-TC2N-1:1
5.0 lnc-TC2N-1:1
5.1 lnc-DICER1-36:2
5.2 lnc-TC2N-1:1