Transcript: lnc-TC2N-1:3

Basic information

LNCipedia transcript ID: lnc-TC2N-1:3 
LNCipedia gene ID: lnc-TC2N-1
Ensembl Gene ID: ENSG00000260711
Ensembl Transcript ID: ENST00000565058
Location (hg38): chr14:91752856-91759798
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6943 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565058.2
Alternative gene names: ENSG00000260711.2; RP11-747H7.3; AL121839.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.3682 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TC2N-1:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TC2N-1:3
4.1 lnc-TC2N-1:3
5.0 lnc-TC2N-1:3
5.1 lnc-DICER1-36:3
5.2 lnc-TC2N-1:3