Transcript: lnc-TCERG1-1:1

Basic information

LNCipedia transcript ID: lnc-TCERG1-1:1 
LNCipedia gene ID: lnc-TCERG1-1
Ensembl Gene ID: ENSG00000248842
Ensembl Transcript ID: ENST00000507391
Location (hg38): chr5:146400981-146407359
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 312 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009536; ENST00000507391; ENST00000507391.1; CTB-1H10.1-001; OTTHUMT00000373639.1; NONHSAT104405
Alternative gene names: XLOC_004595; linc-TCERG1; ENSG00000248842; CTB-1H10.1; ENSG00000248842.1; OTTHUMG00000163475.1; AC011396.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.4519 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCERG1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCERG1-1:1
3.1 lnc-TCERG1-1:1
4.0 lnc-TCERG1-1:1
4.1 lnc-TCERG1-1:1
5.0 lnc-TCERG1-1:1
5.1 lnc-AFAP1L1-38:1
5.2 lnc-TCERG1-1:1