Transcript: lnc-TCF7-1:2

Basic information

LNCipedia transcript ID: lnc-TCF7-1:2 
LNCipedia gene ID: lnc-TCF7-1
Location (hg38): chr5:133968740-133970792
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2053 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000077595.1|ENCT00000350113.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.4867 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCF7-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TCF7-1:2
5.0 lnc-TCF7-1:2
5.1 lnc-PDLIM4-40:2
5.2 lnc-TCF7-1:2