Transcript: lnc-TCF7L2-1:1

Basic information

LNCipedia transcript ID: lnc-TCF7L2-1:1 
LNCipedia gene ID: lnc-TCF7L2-1
Location (hg38): chr10:112888733-112906111
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 317 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017870; ENST00000428766.1; RP11-57H14.3-001; OTTHUMT00000050408.1; NONHSAT016416
Alternative gene names: XLOC_008619; linc-TCF7L2-1; ENSG00000225292.1; RP11-57H14.3; OTTHUMG00000019067.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.3944 non-coding 
CPAT coding probability 6.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCF7L2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF7L2-1:1
3.1 lnc-TCF7L2-1:1
4.0 lnc-TCF7L2-1:1
4.1 lnc-TCF7L2-1:1
5.0 lnc-TCF7L2-1:1
5.1 lnc-VTI1A-10:1
5.2 lnc-TCF7L2-1:1