Transcript: lnc-TCFL5-2:2

Basic information

LNCipedia transcript ID: lnc-TCFL5-2:2 
LNCipedia gene ID: lnc-TCFL5-2
Location (hg38): chr20:62785578-62792110
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028465; NONHSAT080785
Alternative gene names: XLOC_013838; linc-GATA5-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.8795 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCFL5-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCFL5-1:2
3.1 lnc-TCFL5-2:2
4.0 lnc-TCFL5-2:2
4.1 lnc-TCFL5-2:2
5.0 lnc-TCFL5-2:2
5.1 lnc-SPATA2-175:11
5.2 lnc-TCFL5-2:2