Transcript: lnc-TCFL5-2:6

Basic information

LNCipedia transcript ID: lnc-TCFL5-2:6 
LNCipedia gene ID: lnc-TCFL5-2
Location (hg38): chr20:62782754-62794246
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1914 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055418.1|MICT00000222048.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.0726 non-coding 
CPAT coding probability 20.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCFL5-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TCFL5-2:6
5.0 lnc-TCFL5-2:6
5.1 lnc-SPATA2-175:1
5.2 lnc-TCFL5-2:6