Transcript: lnc-TCHP-3:1

Basic information

LNCipedia transcript ID: lnc-TCHP-3:1 
LNCipedia gene ID: lnc-TCHP-3
Ensembl Gene ID: ENSG00000249094
Ensembl Transcript ID: ENST00000446473
Location (hg38): chr12:109880676-109888467
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 728 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446473; ENST00000446473.2; RP1-7G5.6-001; OTTHUMT00000403284.1; NONHSAT030627
Alternative gene names: ENSG00000249094; RP1-7G5.6; ENSG00000249094.2; OTTHUMG00000169280.1; AC007834.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.6092 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCHP-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCHP-1:1
3.1 lnc-TCHP-1:1
4.0 lnc-TCHP-3:1
4.1 lnc-TCHP-3:1
5.0 lnc-TCHP-3:1
5.1 lnc-TCHP-3:1
5.2 lnc-TCHP-3:1