Transcript: lnc-TCIRG1-2:6

Basic information

LNCipedia transcript ID: lnc-TCIRG1-2:6 
LNCipedia gene ID: lnc-TCIRG1-2
Ensembl Gene ID: ENSG00000255236
Ensembl Transcript ID: ENST00000527519
Location (hg38): chr11:68122053-68130518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 491 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT022509; ENST00000527519.2
Alternative gene names: ENSG00000255236.2; CTD-2655K5.1; AP002992.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.9121 non-coding 
CPAT coding probability 11.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCIRG1-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCIRG1-2:6
4.0 lnc-TCIRG1-2:6
4.1 lnc-TCIRG1-2:6
5.0 lnc-TCIRG1-2:6
5.1 lnc-TCIRG1-2:6
5.2 lnc-TCIRG1-2:6