Transcript: lnc-TCL1B-2:3

Basic information

LNCipedia transcript ID: lnc-TCL1B-2:3 
LNCipedia gene ID: lnc-TCL1B-2
Ensembl Gene ID: ENSG00000257275
Ensembl Transcript ID: ENST00000556386
Location (hg38): chr14:95715480-95757656
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2738 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556386.1; RP11-164H13.1-001; OTTHUMT00000413255.1; NONHSAT039495
Alternative gene names: ENSG00000257275.2; RP11-164H13.1; OTTHUMG00000171391.1; ENSG00000257275.6; AL139020.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.2653 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCL1B-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCL1B-2:3
4.0 lnc-TCL1B-2:3
4.1 lnc-TCL1B-2:3
5.0 lnc-TCL1B-2:3
5.1 lnc-GLRX5-8:3
5.2 lnc-TCL1B-2:3