Transcript: lnc-TEAD2-2:6

Basic information

LNCipedia transcript ID: lnc-TEAD2-2:6 
LNCipedia gene ID: lnc-TEAD2-2
Ensembl Gene ID: ENSG00000197813
Ensembl Transcript ID: ENST00000602554
Location (hg38): chr19:49331617-49340282
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 511 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067171; ENST00000602554.1
Alternative gene names: ENSG00000197813.4; CTC-301O7.4; ENSG00000197813.5; AC011450.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.1779 non-coding 
CPAT coding probability 6.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEAD2-2:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TEAD2-2:3
4.0 lnc-AC011450.1-2:3
4.1 lnc-AC011450.1-2:3
5.0 lnc-AC011450.1-2:3
5.1 lnc-NOSIP-15:3
5.2 lnc-TEAD2-2:6