Transcript: lnc-TECRL-5:1

Basic information

LNCipedia transcript ID: lnc-TECRL-5:1 
LNCipedia gene ID: lnc-TECRL-5
Ensembl Gene ID: ENSG00000205682
Ensembl Transcript ID: ENST00000381217
Location (hg38): chr4:61420246-61428221
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2079 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000381217; ENST00000381217.2; RP11-798L4.1-001; OTTHUMT00000361762.1
Alternative gene names: ENSG00000205682; RP11-798L4.1; ENSG00000205682.2; OTTHUMG00000160689.1; AC020741.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 77.5411 coding 
CPAT coding probability 99.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TECRL-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TECRL-4:1
3.1 lnc-TECRL-5:1
4.0 lnc-TECRL-5:1
4.1 lnc-TECRL-5:1
5.0 lnc-TECRL-5:1
5.1 lnc-CENPC-64:1
5.2 lnc-TECRL-5:1